Model
| File | Size | Download |
|---|---|---|
| .gitattributes | 1.5 KB | Download |
| README.md | 4.6 KB | Download |
| annotation_pipeline/README.md | 12 KB | Download |
| annotation_pipeline/codon_tables/GCF_000189635.1.json | 803 B | Download |
| annotation_pipeline/codon_tables/standard.json | 803 B | Download |
| annotation_pipeline/run_annotation.sh | 11 KB | Download |
| annotation_pipeline/run_busco.sh | 4.3 KB | Download |
| annotation_pipeline/run_evaluation.sh | 3.5 KB | Download |
| annotation_pipeline/src/busco_evaluation.py | 6.7 KB | Download |
| annotation_pipeline/src/confidence_network.py | 12 KB | Download |
| annotation_pipeline/src/constants.py | 5.5 KB | Download |
| annotation_pipeline/src/evaluation.py | 41 KB | Download |
| annotation_pipeline/src/model_inference.py | 37 KB | Download |
| annotation_pipeline/src/post_processing.py | 22 KB | Download |
| annotation_pipeline/src/tcn.py | 6.1 KB | Download |
| annotation_pipeline/src/transition_network.py | 6.8 KB | Download |
| annotation_pipeline/src/utils.py | 31 KB | Download |
| annotation_pipeline/src/viterbi.py | 43 KB | Download |
| annotation_pipeline/src/viterbi_backends/__init__.py | Download | |
| annotation_pipeline/src/viterbi_backends/decode_cpu.py | 4.1 KB | Download |
| annotation_pipeline/src/viterbi_backends/decode_gpu.py | 5.9 KB | Download |
| annotation_pipeline/src/viterbi_backends/viterbi_cpu.cpp | 35 KB | Download |
| annotation_pipeline/src/viterbi_backends/viterbi_gpu.cu | 67 KB | Download |
| annotation_pipeline/weights/confidence_network.safetensors | 62 KB | Download |
| annotation_pipeline/weights/transition_network.safetensors | 48 KB | Download |
| config.json | 1.2 KB | Download |
| configuration_generanno.py | 10 KB | Download |
| model.safetensors | 4.3 GB | Download |
| modeling_generanno.py | 55 KB | Download |
| provenance.json | 1.7 KB | Download |
| requirements.txt | 661 B | Download |
| special_tokens_map.json | 122 B | Download |
| tokenizer.py | 5.8 KB | Download |
| tokenizer_config.json | 1.3 KB | Download |
| vocab.txt | 47 KB | Download |
